miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|25015450|gb|CA514893.1|CA514893 CATTTTCACTCTTTAAATTAATAATAAATGTGCCAACTAAACTAGTATCATCATCATCATCATCATCTCAGGATCTGCTG
TATTGTNTCTCTGCAGAAGAATAGAATGGGGATCTTGAAGATGAGGATTTTGGTATTGTTGCTGATAGTTTTGATGGTTT
CACTTGTGAATGGAGATGAGAATGAGTCATTCAAGAAGAAACCGACAATAGTGAAGACGGTGAAGGGTGTGAAGATGTGT
GTTAAGGATTGGGAGTGCAACAAATTGTCAAGATTTTGTTGTAATTTGACGATCACAGATTATCTAGATACCTATCAATT
TGAGCTCCTTTTTGCTAAGAGGAACACACCTGTGGCTCATGCTGTGGATTCCTGGGATTATGATTCTTTCATTAAGGCTG
CTGCCCTTTTCCAGCCTCCTGGTTTTGGTACCACTGGTGGTAAAAAAATGCAGATGAAGGAAGTCGCTGCTTTCTTTGGG
CATGTCGGTAGCAAAACTTCTTGTGGTTATGGAG




Most similar to sp|Q9MA41|CTL1_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9MA41|CTL1_ARATH Chitinase-like protein 1 OS=Arabidopsis
           thaliana GN=CTL1 PE=1 SV=1
          Length = 321

 Score =  153 bits (387), Expect = 5e-37
 Identities = 69/101 (68%), Positives = 80/101 (79%)
 Frame = +1

Query: 211 VKTVKGVKMCVKDWECNKLSRFCCNLTITDYLDTYQFELLFAKRNTPVAHAVDSWDYDSF 390
           VK V+G K+C + WEC+  S++CCN TI+DY   YQFE LF+KRNTP+AHAV  WDY SF
Sbjct: 33  VKKVRGNKVCTQGWECSWWSKYCCNQTISDYFQVYQFEQLFSKRNTPIAHAVGFWDYQSF 92

Query: 391 IKAAALFQPPGFGTTGGKKMQMKEVAAFFGHVGSKTSCGYG 513
           I AAALF+P GFGTTGGK M  KE+AAF GHV SKTSCGYG
Sbjct: 93  ITAAALFEPLGFGTTGGKLMGQKEMAAFLGHVASKTSCGYG 133